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The Researcher’s Bible

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Alan Bundy, Ben du Boulay, Jim Howe and Gordon Plotkin 1985

Including contributions by Graeme Ritchie and Peter Ross.

This version: 9 November 2004.

Abstract

Getting a Ph.D. or M.Phil is hard work. This document gives advice
about various aspects of the task. Section 1 describes the problem -
what is a thesis? Sections 2 and 3 describe some of the pitfalls and hurdles
which students have encountered. Sections 4 and 5 advise about choosing
and then executing a research project. Sections 6, 7 and 8 deal with
two of the three R's: reading and writing. Section 9 describes the
examination process for a research degree, and how to cope with it.
Finally, section 10 gives some references to follow up.

 

1. What is a Thesis?

To get a Ph.D. or M.Phil. you
must write a thesis and sit an oral examination, or vivas. The
oral is generally used to ask for clarification of the thesis, so
the main burden of assessment falls on the thesis. The
University of Edinburgh regulations for postgraduate degrees

give the precise requirements.

What is required from a
Ph.D. thesis is described in
regulation 3.2.4 (b).

How original and significant must
Ph.D. research be? The phrase `containing material worthy of
presentation', from these regulations, suggests a simple rule of
thumb. It should be possible to distill from the thesis, a paper
worthy of publication in a journal. This is not an infallible
guide - refereeing standards are not always what they should
be. The final decision must rest with the examiners.

What is required from an M.Phil. thesis is described in
regulation 3.5.4 (b)

, but is rather vague. Most
M.Phil. theses have been a record of research rather than a
critical survey, but the latter would be possible. Again it
should be possible to distill the essential message of the thesis
into a short paper, but in this case publication in a journal
would not be essential, but some form of publication is still
desirable.

If you do not know what standards are expected
in a journal paper or conference paper - read some! Read some
theses too. Do not be intimidated by American theses. American
Ph.D. students spend 5 or 6 years studying, compared to the
British norm of 3 or 4 years.

 

2. Standard Pitfalls for Postgraduate Students

There are a series of
standard traps lurking to catch postgraduate students, or anyone
else, doing research for the first time. It is as well to be
aware of these, then there is an outside chance of avoiding
them. Some pitfalls are described below (I fell in most - AB).

 

2.1 Solving the World

Most students pick
research goals which are far too ambitious. It is particularly
easy in Informatics to underestimate the amount of work necessary
to automate a task. Tasks that appear effortless to humans,
reveal hidden depths when investigated in computational
detail. Obviously the main burden of helping you choose a
suitable topic will fall on your supervisor. In addition you
should read the literature and talk to fellow workers to find out
what the state of the art is. One good source of ideas is the
further work sections of papers. Read the literature
critically. Another good source is re-doing bad work, properly.

2.2 Manna from Heaven

Having chosen a topic,
what do you do next? It is no good sitting in your room with a
blank piece of paper and a pencil, expecting good ideas to come
from above. What you can do is:

  • Read the literature. Have projects similar to yours been
    tackled before, and were previous attempts successful or
    unsuccessful? What existing techniques can you borrow or adapt to
    your project? Do you need to adapt your project proposal to make
    it novel or feasible?
  • Talk to people. Do not go away and hide. Do not be ashamed of your
    ideas. Other people's are sillier.
  • Tackle a simplified version of your problem. Ask your
    supervisor for exercises, mini-projects, etc.
  • Write down your ideas in a working paper. Imagine
    yourself explaining your ideas to someone. You will be amazed at
    how half-baked ideas take shape and errors are exposed or solved.
  • Give a talk to a small group. This has a similar effect
    to writing down your ideas.

2.3 Computer Junky

Computers are very seductive. You can spend years at a terminal
debugging your programs and tuning up the input/output routines. You
get a satisfying sense of achievement when a bug is exposed or a nice
output generated. This is illusory! Your program must be explainable at
a higher level than code, for it to make a real contribution to
knowledge. Try to plan your program theoretically before going to the
terminal. If you must work some of it out at the terminal then rush
away soon and work out the theory. If you find this hard, try to
describe how it works: to a friend; in a paper or at a seminar. If
people do not understand it is your fault - try harder.

 

2.5 Micawberism

Gathering experimental data can be fun and gives all the appearance
of productive work. Make sure that you know what class of result you
are attempting to establish with your experiments.

  • Talk to people, explain what you think your experiment might
    show.

     

  • Imagine the experiment finished and you have `the data',
    what exactly would you do with it.

     

  • Not only try out the experiment on one or two people first, but
    try out the analysis. Don't keep running experiments in the hope that something will turn up.

2.6 Ivory Tower

Single minded dedication to your topic is a
good thing, but do not shut out the rest of the world completely. Keep
in touch with the state of the art in related fields. Talk to other
people about their research. Attend selected seminars and
lectures. Set aside a part of the week for reading reviews and
abstracts and skimming papers.

 

2.7 Misunderstood Genius

It is all to easy to believe that the reason why no one understands
your ideas is because you are a genius and the others are all looneys
and charlatans. There are alternative causes for misunderstanding that
you should consider:

 

  • Love of Jargon:
    Informatics is full of jargon: try to rephrase your ideas
    using ordinary English; try to rephrase your ideas in someone else's jargon. Do they come out any differently?

     

  • If I can do it, it's trivial:
    Once you
    have seen the solution to a
    problem it appears trivial. Then it is tempting to say `that's too
    easy, I'll try something else'. This is a non-terminating loop! Your
    solution won't be trivial to other people (probably it will be wrong or
    over-complex) and should anyway be used as a basis for further work.
    Motto: do the easiest thing first, then stand on the shoulders of these achievements and do the
    next easiest thing, etc. - a better infinite loop.

     

  • Love of complexity:
    It is not a virtue to make a
    complicated program - it is just a nuisance to other people. Do it the simplest way you can. Occam was perfectly right.

     

    2.8 Lost in Abstraction

    To be worthwhile your research work should contribute to solve a
    hard problem in Informatics: e.g. making computers easier to use,
    smarter, more dependable, or better able to model natural systems. But
    to achieve anything you
    must tackle these abstract problems in a concrete situation, that is
    you
    must build a program that is easy to use, smart, dependable or a good
    model. Trying
    to tackle the problem in the abstract will only lead to paralysis and
    frustration.

     

    2.9 Ambitious Paralysis

    It is good to have high standards for your finished product but do
    not apply the same standards to your initial attempts, or you may never
    get started . Do something simple, then apply your standards to refine
    it into something worthwhile.

     

    2.10 Methodology does not make a Thesis

    Since Informatics is a relatively young field, and is
    interdisciplinary in nature, it does not have a single methodology. One of the difficult
    tasks that you face as an Informatics research student is the development,
    consciously or unconsciously, of a suitable approach to the problem(s)
    being tackled. In the course of evolving an appropriate methodology,
    you will encounter many other methodologies and philosophical
    positions, many of which will seem outrageous or hopelessly
    misguided. You will nevertheless find that these bizarre viewpoints
    have strong proponents, perhaps at the next desk in your
    office. Hence, much of the formative period for your own methodology
    is spent having heated arguments with fellow researchers. Out of
    this struggle, your reading, your attendance at seminars, your
    debugging, and other hard work, will emerge your world view on Informatics and
    related philosophical issues. In later years, you will probably come
    to take this outlook for granted, perhaps modifying it occasionally in
    some way; however, it is quite likely to loom very large in your life
    during the period of your project, and when you come to write your
    thesis you may feel compelled to expand upon your philosophy of life
    at length. Restrain yourself - the examiners won't be all that
    interested. Give a brief summary of your methodological assumptions,
    giving references across to existing arguments or frameworks where
    appropriate, and confining yourself to the points which are essential
    to the understanding of the substance of your thesis. If your view is
    so wildly radical that you really need to spend fifty pages expounding
    it, it may be slightly suspect.

     

    2.11 The Discovery Route is not a Justification

    In the course of your project, you will come to certain beliefs
    about technical issues, some of which will be novel, and many of which
    will be rediscoveries (or new understandings) of established concepts.
    In presenting your thesis, it is important to distinguish between the
    justification (for instance, generality, efficiency, perspicuity,
    practicality) for some position or technique, and the route by which
    you happened to come to favour this idea (such as that it seemed
    similar to your ad hoc program, it was better than the theories you
    were taught as an undergraduate). The readers and examiners aren't
    particularly interested in reconstructing how you became convinced of
    an idea - they are interested in the general arguments in favour of the
    idea. When you have just become convinced of some point, your own
    discovery route will seem like the dominant reason for it, so you may
    need a cooling-off period before you can detach yourself sufficiently
    to write a reasoned support for the idea, particularly if it is your
    own idea as opposed to enthusiasm for someone else's.

     

    3. Psychological Hurdles

    Doing research shares the same psychological difficulties as other
    creative endeavours such as writing novels and plays or painting
    pictures. Some of these difficulties and their antidotes are set out
    below.

     

    3.1 Mental Attitude

    Part of a researcher's skill includes an appropriate mental
    attitude to his/her work. This can be learnt, if you know what you are
    aiming for and are determined enough. One of the main ingredients of
    this mental attitude is a belief in what you are doing. Do not be
    afraid of a little egotism! You must believe that the problem you are
    tackling is important and that your contribution to the solution is
    significant. Otherwise, how are you to generate the energy to see
    yourself through the long hours of hard work required? The first step
    in obtaining this self-assurance is to pick a research topic you can
    believe in (see section 4). Of course, you must not become so arrogant
    that you can no longer listen to criticism. You must be prepared to
    modify your ideas if they are wrong.

     

    3.2 Research Impotence

    For many people, research prowess is a kind of virility symbol.
    Lack of success at research is accompanied by the same feelings of
    inadequacy as sexual impotence and, like it, can be a self fulfilling prophecy. Doubts
    about your own ability can put you in a frame of mind where the
    dedication (Edison said that genius was 1% inspiration and 99%
    perspiration, and he should know.) and enthusiasm necessary to produce
    results evaporates. The way out of this vicious circle is to realise
    that research ability does not depend on some magic essence. It is a
    skill which can be learnt, like any other. You too can do original
    research by following the instructions in this guide.

     

    3.3 Dealing with Criticism

    We all find criticism hard to take, but some of us hide it better
    than others. If you are to make progress in your research you will have
    to learn to seek out criticism and take it into account. You will have
    to learn to differentiate between valid and invalid criticism. If you
    feel too close to the subject to decide, ask a friend for a second
    opinion. If the criticism is invalid, maybe the critic has
    misunderstood. Can you improve your explanation?

    You are going to have to learn to take some knocks: rejections
    from journals; rough rides in question time. Take it with a smile.
    Learn what you can. Don't be tempted to give up - you are in good
    company. If you study the lives of famous scientists you will see that
    many of them had to endure very heavy criticism. In fact some of the
    best work is the product of personal feuds - each scientist busting to
    outdo the other. This is where your faith in yourself will be tested to
    the full.

     

    3.4 Early Morning - Cold Start

    Almost everybody finds it difficult to start work at the beginning
    of their working day, but once they have started, it is relatively easy
    to keep going. The remedy is twofold:

    1. Make yourself a regular working schedule - and stick to it. It
      doesn't have to be 9-5, but there should be a definite time of day
      when you expect to start work. Otherwise, you will find yourself
      postponing the evil moment with endless, routine, domestic chores.
    2. Make sure you leave some non-threatening, attractive task to
      do
      first thing. For instance, do not leave off writing the day before at
      the beginning of a new hard section. Leave something easy to start
      writing: a paragraph which is routine for you, a diagram to draw or a
      simple procedure to write.

    3.5 Theorem Envy

    You have chosen a new field where the research methodology has not
    yet been worked out. You may get a hankering for the methodology you
    were brought up on. For mathematicians this might be the longing to
    prove clean, clear theorems - theorem envy. For engineers this might be
    screwdriver envy, etc. Be wary! Only try to prove a theorem if it is
    clearly relevant to your overall purpose. For instance, proving the
    termination of a procedure you have found to be useful may well be
    relevant. Finding a procedure whose termination you can prove, but
    which is not otherwise interesting, is not relevant.

     

    3.6 Fear of Exposure

    You have a great idea and it only
    remains to test it by proving a theorem, writing a program, explaining
    it to a friend etc. But something is holding you back. You find it
    difficult to start work. Could it be that you are secretly afraid that
    your idea is not so great after all? Hard experience has taught you
    that ideas that appear to be solutions to all your problems in the
    middle of the night, evaporate in the cold dawn. Courage! Research is
    always like this. Ten steps forward and nine steps back. The sooner you
    subject your idea to the acid test, the sooner you will discover its
    limitations and be ready for the next problem.

     

    4. Choosing a Research Project

    Your research project must fulfil the following criteria:

    1. You must be enthusiastic about it.

       

    2. Solving the problems it entails must be worthy of a Ph.D.

       

    3. It must be within sight of the state of the art, i.e. it must be `do-able' in three years.

       

    4. There must be someone in the School willing to supervise it.

    The importance of 1. cannot be overestimated. You are going to
    need all the enthusiasm you can muster to give you the perseverance and
    motivation to see you through what will be a hard, lonely and
    unstructured period. It will help if you choose to tackle a problem you
    consider of central importance (though you cannot expect to bite off
    more than a small chunk of it). It will also help if you choose an area
    which utilizes your already proven abilities, e.g. theoretical
    computing for mathematicians; computational linguistics for linguists.
    Beware of
    choosing an area new to you because of its superficial appeal. The
    gloss will soon wear off when you are faced with the hard grind
    necessary to get a basic grounding in it.

    Having chosen the general area or problem you want to work on,
    you must try to define a specific project. This is where your
    supervisor comes in. Find a member of academic or research staff whose
    interests lie in this area and who is prepared to advise you. S/he may
    have some projects to suggest and will also be able to pass an opinion
    on the worthiness (2) and doability (3) of anything you suggest. On the
    whole, beginning students tend to underestimate the worthiness and
    overestimate the doability of projects - quite modest sounding projects
    prove harder than they look. So do listen to your supervisors advice
    and don't fall into `solving the world', standard pitfall no. 2.1.

    Get your supervisor to suggest some reading material. You will
    find suitable projects in the future work sections of papers and
    theses. It is good research methodology to continue working on a
    problem from where someone else left off. You may find some work you
    consider badly done - consider redoing it properly. You may be able to
    simplify someone else's program, relate it to other work or build a more powerful
    program.

    Have a range of ideas on the boil. Try to construct a hierarchy
    of research goals. This imposes a structure on the work and also acts
    as a safety net when you find (inevitably) that you have attempted more
    than is possible in the time available.

    Projects to avoid, because they lead to bad research, are
    programs which do a task without addressing any important issues and
    programs which are not based on previous work (also see the section on
    standard pitfalls).

    5. Research Methodology

    Informatics is a young science which draws on the
    methodologies of many fields and is gradually evolving its own
    methodology. See the
    Informatics Research Methodologies course

    for more
    discussion of these issues. This methodology supports a variety
    of approaches to your research project. For example, you might
    start by trying to build a theory of how some task might be
    automated, or by improving somebody else's theory, or you might
    try to rationally reconstruct someone else's work. The `rational
    reconstruction' approach is often fruitful, since it is still
    regrettably often the case that Informatics research will focus
    on implementation and performance while leaving the assumptions
    and principles behind the work implicit and vague. But, however
    you start, get yourself a theory!

    6. Writing Papers

    Research papers are the major product of the School. They are the
    yardstick by which our individual and group progress and success are
    measured. They are therefore very important and you should expect to
    devote a large part of your research career to writing them. Writing
    papers is the main way of communicating with the rest of the Informatics world
    and it is also a good vehicle for clarifying and debugging your ideas.

    As well as the dizzy heights of books, theses and journal
    papers, there are various lesser forms of writing. You should
    understand what these are so that you can make full use of them.

    You should make writing a regular part of your life. Keep
    records of everything you do: notes of ideas you have; documentation of
    programs; lecture notes; notes on papers you read. These serve several
    purposes: an aid to your memory (you will be amazed at how quickly you
    forget); a vehicle for clarification (how often you will find that
    problems appear and are solved as you try to explain things to yourself
    and others) and as a starting point for a working paper. Make sure you
    write them legibly enough to read later and that you file them
    somewhere you can recover them. Recording and storing these notes electronically works well.

    6.1 Informatics Technical Reports

    The School has a technical
    reports series

    to which you are strongly encouraged to
    contribute. In particular, papers submitted to journals, conferences,
    etc should be included in this series. If you are asked to sign a
    copyright form by a publisher check it first with your local Service
    Manager to ensure that the School will retain the right to make your
    paper available electronically via our web pages.

    6.2 Publishing Papers

    When you and your supervisor think that you have something worth
    publishing externally you should submit a paper to a conference or
    journal. In preparing a paper
    for publication make sure that credit is given to everyone who has
    helped with its preparation, e.g. your supervisors and anyone else who
    has contributed ideas, others who have commented on the draft, and so
    on. Where a contribution is significant (for example, your supervisor's
    contribution) consider joint authorship. Remember to acknowledge
    sources of support such as source of your research studentship and
    related support for facilities used for the research and so on. If
    uncertain consult your supervisor about these points. Washington
    University in St Louis has a policy on authorship
    that reflects the scientific consensus on who should be the authors of a paper and what their rights and duties are.

    A submitted paper will be vetted by several referees chosen by the journal editor.
    Do not be too downhearted if your paper is rejected - you will be in good
    company. Read the referees' comments carefully. Are they right or have
    they misjudged you? Is your rejection absolute, or have you been encouraged to resubmit after corrections or further work?
    Was your choice of journal appropriate? Consider
    submitting your paper elsewhere, but first take into account those
    criticisms you consider valid.

     

    6.3 Conference Proceedings

    A lesser form of publication is the proceedings of a conference.
    Conferences will often consider descriptions of work in progress. They
    will usually be refereed just like journal papers. Both papers and
    verbal presentations usually have strict length limits (from 5-15 pages
    and 10-30 minutes), so be prepared to be concise. Presenting a paper at
    a conference will be very valuable for you: you will get feedback from
    a wider audience than usual; you are more likely to meet people than a
    non-participant and you will find it easier to get funding to attend.

    Advice about expressing your ideas to a large
    audience in plain English see [Orwell68].

    7. Guide to Writing

    During the course of your research project you will need to
    write many documents: a thesis proposal and thesis outline,
    research notes, records of papers you have read, conference and
    journal papers, and finally the thesis itself. A badly written
    thesis is not usually a cause for total failure, but can cause
    soul-destroying delays while it is rewritten and
    reexamined. Poor writing will also make it difficult for others
    to understand your work. It is, therefore, quite important that
    you learn to write well. This section contains some tips and
    rules to improve your writing. Nobody knows enough about good
    writing to do more than that. There is a good guide to style
    and presentation of scientific papers in [Booth75]. Helpful
    information about writing theses is given by [Parsons73]. Useful
    references for writing technical reports can be found in
    [Cooper64]. Advice about writing Computer Science papers is
    given in [Zobel 04]. The College Transferable Skills Programme
    runs a
    course on paper production

    for Informatics postgraduate
    students, which you should consider attending.

    There are no hard and fast rules of good writing, but if you
    are going to break one of the rules below you should have a good reason
    and do it deliberately, e.g. you want to overwhelm the funding agency
    with jargon rather than have them understand how little you actually
    achieved.

     

    • Your paper should have a message, i.e. an argument that you are
      advancing, for which your research provides evidence. Make sure you
      know what this message is. Summarise it in a few words on paper or to a
      friend. Make sure the message is reflected in the title, abstract,
      introduction, conclusion and in the structure of the paper.

       

    • Putting your case so that it can be understood is not
      enough -
      you must present it so that it cannot be misunderstood. Think of your
      audience as intelligent, but (a) ignorant and (b) given to wilful
      misunderstanding. Make sure that the key ideas are stated
      transparently, prominently and often. Do not tuck several important
      ideas into one sentence with a subtle use of adjectives. Do not assume
      that any key ideas are too obvious to say. Say what you are going to
      say, say it, and then say what you just said.

       

    • Do not try to say too much in one paper. Stick to the main
      message
      and only include what is essential to that. Reserve the rest for
      another paper. A reader should get the main idea of the paper from the
      first page. Long rambling introductions should be pruned ruthlessly.

       

    • The basic framework for a scientific paper is: what claim/hypothesis am I making and what is the evidence for this claim.

       

    • To keep the technical standard of paper uniform, have a particular
      reader in mind as you write.

       

    • You do not have to start writing at the beginning. In
      particular,
      the introductory remarks are best written when you know what will
      follow. Start by describing the central idea, e.g. your main technique,
      procedure or proof. Now decide what your hypothetical reader has to
      know in order to understand this central idea and put this information
      into the introductory sections/chapters.

       

    • Use worked examples to illustrate the description of a
      procedure. Do not use them as a substitute for that description.

       

    • Clearly state what is new or better about what you have done. Make
      explicit comparisons with closely related work.

       

    • If you find yourself using a long noun phrase to refer to the same
      entity or idea several times then you should probably define a new term. Do not define a new term unless you really need it.

       

    • Learn to use a keyboard (all 9 fingers), a screen editor,
      a text
      formatter, a spelling corrector and a grammar correcter. Type your paper into a computer,
      either directly or from notes or from a handwritten manuscript. This
      will save time when it comes to alterations, corrections, etc. Run the
      finished product through spelling and grammar correcters.

       

    • Ask several people to read the draft versions. Expect to spend time incorporating
      their suggestions into the text. If they did not understand it is your
      fault, not theirs. It is discourteous to ask anyone to reread a paper
      if you have not yet considered their previous comments. Draft theses
      should be read by supervisors, but
      should not
      be read by examiners. The remarks below are relevant to all writing, but are particularly addressed to thesis writing.

       

    • Your thesis should not be a `core-dump' of all you know
      about
      everything remotely related to the topic. Instead, there should be a
      single message, and you should carefully consider how each part of your
      thesis contributes to putting over this message. Remember that you are
      not writing specifically for your examiners. You should be addressing
      yourself to researchers following in your footsteps, who will be
      grateful for a good but relevant scene-setting and a clear argument.
      They will also be considering the state of knowledge at the time you
      were writing, which may be different from the state at the time they
      are reading it, and you should give sufficient detail to fix this
      without boring them rigid. It is also wise to remember that researchers
      around the world will also, implicitly at least, be judging the quality
      of the University and of the School when they read your work. Your
      examiners will be bearing this in mind even if you don't - so you
      should too.

       

    • You can write your thesis top down, bottom up, or
      bi-directionally. Top down you start with some notes, and gradually
      unpack them into thesis chapters. Bottom up, you describe different
      aspects of what you have done, and then put these parts together to
      form the thesis. Neither of these approaches is very successful on its
      own. Top down tends not to work because your opinion as to what you
      have done changes as you unpack your ideas. Bottom up produces a dog's dinner of
      unrelated snippets. A bi-directional combination is more successful.

       

    • As you do your research you should write your ideas and
      results up
      as a series of notes and working papers. Some of these papers may be
      worthy of publication in a conference or journal. Collect these notes
      and papers into a single file (paper or electronic) entitled `thesis'.
      This is enough bottom-up work to start with. Now work top down.

       

    • Build your thesis `message'. This should have the following
      properties.
      - It should consist of a few sentences, i.e. be of abstract length. -
      The sentences should form the steps of an argument. This argument is
      the message of your thesis.

      - Each sentence should outline the contents of some part, roughly a
      chapter, of your thesis.

      - The message should serve as a guide to the: title, abstract,
      summary, conclusion and the whole body of your thesis.

       

    • The thesis message should help you in the following ways:

      - It should ensure that the parts of your thesis hang together in a
      coherent manner. It should suggest how to reorganise the various notes
      and papers in your `thesis' file so that they form an argument.

      - It should answer the questions `What have I done?' and `Why does
      this work deserve a degree?'. You should now know what to emphasize in the abstract, introduction, conclusion, title, etc.

      - It should answer questions like `What should be discussed in
      'related work' ?'. In fact, you should know precisely what role each
      chapter is meant to play in the whole, i.e. what it is supposed to
      prove.

       

    • The thesis message is short and easy to edit. You can play around
      with it until you get something you are happy with.

       

    • Now you can go back to bottom up activity - reworking the existing
      material, and writing new material, to fulfil the demands of the `message'.

    To give a flavour of the `message' described above, we give an
    example from the Ph.D. thesis of a famous AI researcher, Fr. Aloysius
    Hacker.

     

    Example of a Thesis Message.

    "The Computational Modelling of Religious Concepts"

    by Fr. Aloysius Hacker

    1. We apply ideas from Informatics to the understanding of
      religious concepts.
    2. Previous attempts to explain religious concepts, e.g. the holy
      trinity and miracles, have often encountered philosophical problems.
    3. These problems arose because the appropriate terminology was not
      available. Computational terminology often provides an appropriate analogy.

       

    4. Although some problems still remain, e.g. free will,
    5. We are
      seeing the beginning of a new, computational theology.

    Each of these 5 points corresponds to one or two chapters of the
    thesis. Chapter 1 introduces the general notion of computer modelling
    and how it might be applied to religion by drawing analogies between
    computational concepts and religious ones to suggest consequences and
    non-consequences of religious positions, and hence debug some of the
    theological debate of the last two millenia.

    Chapter 2 is `related work'. It surveys the more important
    theological positions on a variety of `problem' concepts, e.g. the holy
    trinity, miracles, free will, and points out the contradictions
    inherent in these positions.

    Chapter 3 and 4 are the heart of the thesis. Chapter 3 draws an
    analogy between the trinity and trebly recursive functions, and uses
    this to resolve philosophical difficulties about God being both one and
    three entities, simultaneously.

    Chapter 4 develops an extended analogy in which the universe is
    seen as a program for which God is the programmer, and in which
    miracles are seen as run time patches inserted during interruptions.

    Chapter 5 is `further work'. Outstanding problems are
    mentioned. There is a discussion of the problem of free will and
    possible computational accounts of it.

    Chapter 6 is the conclusion. The results are summarised and the
    relative success of computational approaches to religious problems are
    summarised. The current work is seen as the humble beginnings of an
    important new approach to theology.

     

    8. Guide to Reading

    Staying in touch with related research is one of the main subgoals
    of obtaining a Ph.D. Some of the difficulties were raised at a
    Department of Artificial Intelligence `research difficulties' meeting
    in the context of reading habits. Here is the relevant quote from the
    minutes of that meeting:

    `Reading is difficult: The difficulty seems to depend on
    the stage of academic development. Initially it is hard to know what to
    read (many documents are unpublished), later reading becomes seductive
    and is used as an excuse to avoid research. Finally one lacks the time
    and patience to keep up with reading (and fears to find evidence that
    one's own work is second rate or that one is slipping behind).'

    Clearly there are ways of staying in touch other than
    reading, but similar difficulties apply. One still has to maintain a
    proper balance between learning about other people's work and getting
    on with your own.

    It may be helpful to think of the work of others as arranged in
    concentric circles around your own, where the relevance of the work
    decreases as you get further from the centre. For instance, if you were
    studying anaphoric reference, then the inner circles would
    consist of other work on anaphora; the middle circle would consist of
    work in natural language understanding and computational linguistics
    and the outer circle would contain other work in Informatics and linguistics.
    You can add extra circles to taste. Obviously, you can afford to spend
    less time keeping in touch with the work in the outer circle than that
    in the inner circle, so different study techniques are appropriate for
    the different circles.

     

    8.1 Outer Circle

    You can achieve an appropriate level of familiarity with the work
    in this circle by skimming papers or reading the abstracts. It is a good idea
    to set aside an hour each week for visiting the library (physically or
    electonically) to skim the
    latest arrivals. An alternative to skimming is attending conferences to
    listen to both the short presentations and the longer tutorial
    addresses. It is also very valuable to corner people in the coffee room
    or corridor and engage them in a short conversation about their latest
    ideas.

     

    8.2 Middle Circle

    Here you need to spend some more time. The methods described for
    outer circle are still applicable, but are not sufficient - you will
    also need to read some papers right through and engage in some longer
    conversations. You will want to read some more specialized textbooks
    and attend seminars etc. It is worthwhile keeping a record of papers
    you have read and some comments about them, otherwise the benefits
    derived from reading them will evaporate as your memory fades. It helps
    to write your literature survey in parallel with the rest of your
    research. Write a paragraph on each paper as you read it; this will
    save you re-reading it again when you come to write up your thesis.

     

    8.3 Inner Circle

    For a really deep understanding, reading a paper once is not
    sufficient. You should read it several times and get involved in it.
    Work through the examples. Set yourself some exercises. Get in touch
    with the author(s) about it. Talk or write to them with a list of queries
    and/or criticisms. One invaluable way to get a deep understanding of
    some work is to try to teach it to others. Offer a seminar, either
    formal or informal. You will need your own personal copy of papers you
    are making heavy use of. If you don't have one, photocopy someone
    else's.

    When reading a paper you will find that you understand it
    better if you have a question in mind which you hope the paper will
    answer. The precise question will depend on the circumstances, but
    might be: What claim is being made? What is the evidence for this claim? Is it
    convincing? How can I use this work in my own research project?
    etc.

    Finally don't be afraid to admit your ignorance by asking
    questions. Everybody feels sensitive about their areas of ignorance and
    in a field as multi-disciplinary as Informatics we all necessarily have wide
    areas of ignorance. People enjoy answering questions - it makes them
    feel important. You can usually get a far better feel for a piece of
    work by engaging in a discussion with someone who understands it than
    just by reading the paper alone.

     

    9. The Examination of Theses

    When you have written and rewritten your thesis to your
    supervisors satisfaction then you are ready to submit. Inform the
    College Office of your intention to submit. Make sure that your thesis
    is in accord with the University's postgraduate regulations
    . Get two copies
    bound in the approved manner and take them to the College Office.

    Your supervisor will suggest suitable internal and external
    examiners. They may consult you informally about the choice. The
    College will send your copies to the examiners. When the examiners are
    ready - and that could take several months - the internal examiner will
    arrange an oral examination or viva.

    The viva is a question-answer session between you and your
    examiners, lasting several hours. Your supervisor may attend, as an
    observer, at the examiners' discretion. It will normally be in an
    office in the School; the external examiner (and possibly you) will
    travel up for the day. Dress is normal office wear and the occasion is
    fairly relaxed. Dress up a bit if it makes you feel more comfortable.

    Before and after the viva the examiners have to submit reports
    to the College. The post-viva report is a joint one and contains a
    recommendation taken from Regulation 3.10.4
    . Rougly speaking, the options are:

    1. Accept the thesis as it stands.
    2. Accept with minor alterations or with deficiencies that can be remedied without further study.
    3. Accept the thesis, but not the oral, and examine the candidate
    further.
    4. Reconsider after a further period of supervised study and
    resubmission.
    5. Reconsider a Ph.D. as an M.Phil..
    6. Reject.

    You will usually be told the recommendation informally, with the
    understanding that it can be overturned by the College or Senate (and
    this is not unheard of).

    Recommendations 1, 3 and 6 are very rare.

    Recommendation 2 is to allow correction of errors that do not require further research. These can vary from minor
    typographical errors and
    spelling mistakes to major rewrites (there are actually two separate recommendations covering the two extremes).
    Typically, just the internal examiner will check that the thesis has been completely
    corrected and will then inform the College who will process your thesis
    and inform you of the outcome. This may take several months.

    Recommendation 4 is to allow further research, usually requiring
    a major rewrite. You will have to rewrite, rebind and resubmit your
    thesis and
    go through the whole procedure again with the same examiners. This is
    your last chance. Recommendations 4 and 5 are not available the second
    time
    around.

    Recommendation 5 is for theses which are not considered suitable for a
    Ph.D., but which are considered suitable for an M.Phil.. We are not
    supposed to say it is a consolation prize. You may or may not have to
    undertake further study and rewriting. You will have to get it rebound
    (in M.Phil. covers!), resubmit and have another viva.

    The purpose of the viva is for the examiners to satisfy
    themselves
    that the thesis is acceptable as a Ph.D./M.Phil.. In particular, they
    will have raised various doubts in their pre-viva reports, which they
    must satisfy themselves about during the viva, and which they must
    discharge on the post-viva report. If they do not discharge these
    doubts in their post-viva reports then it is not unknown for the
    College to override their recommendations.

    The examiners will ask you questions to try to satisfy their
    doubts. Because of time pressure, they often start with the most
    serious and/or most general questions. For instance, they might start
    by asking you to summarise in your own words what you consider to be
    the key contributions in the thesis. It is worth having a succinct
    answer ready to this one. You and and your supervisors can try to
    anticipate other questions, but frequently the things you are most
    worried about have now been adequately covered in thesis, and the
    actual questions will surprise you. Thus it is better to have spent the
    previous night getting a good sleep, so that you are fresh and alert
    for the viva, than to have spent it rehearsing answers to question that
    you will not be asked.

    Do not ramble. Pay attention to the examiners questions and
    statements, and respond pertinently and succinctly. If the examiners
    can see that you are coherent, intelligent and aware of the issues in
    your field then they will be keen to award you your degree, and may be
    more prepared to overlook minor faults in the thesis.

    Sitting a viva is a little like debugging a program. The thesis
    is the program, you are the programmer, the Ph.D./M.Phil. standards are
    the language syntax, and the examiners are the interpreter. During the
    viva you will get various error messages. These messages do not need to
    be taken at face value - they may be based on a misunderstanding - but
    they cannot be ignored. Assume that each error message will lead to
    some alteration in your thesis. Of course, you hope that this will only
    be a minor alteration, but do not let this hope blind you to the
    possibility that the problem is more fundamental. Do not get aggressive
    or defensive with your examiners. You cannot bludgeon or sweet-talk them
    into passing you, any more than you can force or persuade the computer
    to accept your buggy program. What you have to do is: clarify your own
    thinking, clear up any misunderstandings between you and your
    examiners, make sure you understand how to correct your thesis, and
    then correct it. The viva is a cooperative process. Your examiners want
    to pass you. Give them all the help they need.

     

    10. References

    • [Bligh72] Bligh D., What's the use of lectures?
      , Penguin, 1972
    • [Booth75] Booth V., "Writing a scientific paper", in
      Biochemical Society Transactions
      , vol 3, 1975
    • [Cooper64] Cooper B., Writing Technical Reports
      , Pelican, 1964.
    • [Orwell68] Orwell G., The Collected Essays
      , Penguin, 1968.
    • [Parsons73] Parsons C.J., Theses and Project Work
      , George Allen and Unwin, 1973.
    • The University of Edinburgh's Code of good practice in research.
    • [Zobel 04] Zobel J., Writing for Computer Science
      , Springer, 2004.
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